Category

CNV


Usage

cnvnator -root file.root -genotype bin_size [-ngc]


Manual

Once prompted enter a genomic region, e.g.,

>12:11396601-11436500
or
>chr12:11396601-11436500
or
>12 11396601 11436500
or
>chr12 11396601 11436500

One can also perform instant visualization by adding the word 'view', e.g.,

>12:11396601-11436500 view
or
>chr12:11396601-11436500 view
or
>12 11396601 11436500 view
or
>chr12 11396601 11436500 view

For genotyping of multiple regions one can use input piping, e.g.,

./cnvnator -root NA12878.root -genotype 100 << EOF
12:11396601-11436500
22:20999401-21300400
exit
EOF


Share your experience or ask a question