Reference Code backup Executable files
Convert alignments in BAM or SAM format into fastq format.
bam2fq.py -i test_SingleEnd_StrandSpecific_hg19.bam -s -o bam2fq_out2
--version | show program’s version number and exit |
-h, --help | show this help message and exit |
-i INPUT_FILE, --input-file=INPUT_FILE | |
Alignment file in BAM or SAM format. | |
-o OUTPUT_PREFIX, --out-prefix=OUTPUT_PREFIX | |
Prefix of output fastq files(s). | |
-s, --single-end | |
Specificy ‘-s’ or ‘–single-end’ for single-end sequencing. | |
-c, --compress | Specificy ‘-c’ or ‘–compress’ to compress output fastq file(s) using ‘gzip’ command. |