Category

Sam/Bam Manipulation


Usage

divide_bam.py -n 3 -i SingleEnd_StrandSpecific_50mer_Human_hg19.bam -o output


Manual

--version show program’s version number and exit
-h, --help show this help message and exit
-i INPUT_FILE, --input-file=INPUT_FILE
  Alignment file in BAM format. BAM file should be sorted and indexed.
-n SUBSET_NUM, --subset-num=SUBSET_NUM
  Number of small BAM files
-o OUTPUT_PREFIX, --out-prefix=OUTPUT_PREFIX
  Prefix of output BAM files. Output “Prefix_num.bam”.
-s, --skip-unmap
  Skip unmapped reads.


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