Category
Generic
Usage
chainToPsl in.chain tSizes qSizes target.lst query.lst out.psl
Manual
This tool is part of UCSC Genome Browser's utilities.
Where tSizes and qSizes are tab-delimited files with
columns.
The target and query lists can either be fasta files, nib files, 2bit files
or a list of fasta, 2bit and/or nib files one per line
options:
-tMasked - If specified, the target is soft-masked and the repMatch counts are
computed
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