Category
Generic
Usage
pslLiftSubrangeBlat isPsl outPsl
Manual
This tool is part of UCSC Genome Browser's utilities.
Lift a PSL with target coordinates from a blat subrange query
(e.g. blah/hg18.2bit:chr1:1000-20000) which has subrange
coordinates as the target name (e.g. chr1:1000-200000) to
actual target coordinates.
options:
-tSizes=szfile - lift target side based on tName, using target sizes from
this tab separated file.
-qSizes=szfile - lift query side based on qName, using query sizes from
this tab separated file.
Must specify at least on of -tSizes or -qSize or both.
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